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Cryo-Electron Microscopy

A structural biology technique that flash-freezes biomolecules and images them with electrons to reveal near-atomic 3D structures of proteins and complexes.

Current stories

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Cryo-EM shows a methanogen shuts off nitrogen fixation by binding its enzyme into an inactive supercomplex

University of Arkansas researchers used cryo-EM to show a methanogen stops fixing nitrogen by binding its enzyme into an inactive supercomplex. The structure, in Nature, pinpoints the regulatory contact a bioengineer would have to control.

Publishers:phys.org

Reality

Evidence50
Adoption
Not scored
Hype gap+45
Incentives
Not scored
Confidence45
scienceOne report1 publisher

PII proteins lock a methanogen's nitrogenase into an inactive supercomplex

Six PII complexes hold three units of a methanogen's nitrogenase inactive in the first archaeal nitrogenase structure, solved by cryo-EM. ATP and 2-oxoglutarate free the enzyme and triple its activity in vitro, a switch living cells have yet to confirm.

Publishers:nature.com

Reality

Evidence70
Adoption
Not scored
Hype gap+10
Incentives
Not scored
Confidence65
scienceOne report1 publisher

Three helicases and a tethered enzyme dismantle the human spliceosome after each intron

Structures in Nature catch human spliceosomes at two stages of termination as three helicases and the enzyme DBR1 free and debranch the spent intron. How the machine is cleared for its next round, and its intron sent to decay, had been an open question.

Publishers:nature.com

Reality

Evidence62
Adoption
Not scored
Hype gap+5
Incentives
Not scored
Confidence55
scienceOne report1 publisher

Cryo-EM resolves 76 coexisting shapes of a bacterial RNase P ribozyme

Researchers reporting in Nature used cryo-EM to resolve 76 coexisting active and inactive conformers of a bacterial RNase P RNA. They argue that the enzyme's activity depends on how this population of shapes moves together with its bound magnesium ions.

Publishers:nature.com

Reality

Evidence60
Adoption
Not scored
Hype gap+25
Incentives
Not scored
Confidence55
scienceOne report1 publisher

NTU designs a compound that cuts off a resistant lung bacterium's energy supply

NTU scientists built a compound that starves Mycobacterium abscessus of energy; paired with the drug clofazimine it cut the microbe a hundredfold in four days. Two other teams mapped the same bacterium's virus defenses and a related pathogen's toxin-firing weapon.

Publishers:phys.org

Reality

Evidence42
Adoption8
Hype gap+25
Incentives55
Confidence38
scienceOne report1 publisher

Graphene reservoirs make cryo-EM ice thickness tunable through reservoir depth

Researchers report that graphene reservoirs confine sub-100-nm liquid films for cryo-EM, so ice thickness can be tuned by reservoir depth. They trace decades of trial-and-error ice preparation to thin films that drain and rupture on their own before anything freezes.

Publishers:nature.com

Reality

Evidence50
Adoption
Not scored
Hype gap+20
Incentives
Not scored
Confidence45
scienceOne report1 publisher

Crick structures show how RAD51 paralogs build and cap DNA repair filaments

Crick researchers report that two four-subunit RAD51 paralog complexes assemble and cap DNA repair filaments, after about 20 years of stalled study. The genes sit in the BRCA pathway and the structures may help explain disease mutations, but the work includes no drug or patient data.

Publishers:phys.org

Reality

Evidence50
Adoption
Not scored
Hype gap+10
Incentives40
Confidence55
scienceOne report1 publisher

Freezing RyR1 in its own membrane shows muscle calcium channels priming each other open

A Max Delbrück Center team froze rabbit sarcoplasmic reticulum with the channels still in the bilayer and caught six opening states, giving coupled gating a structural account almost 30 years after it was described.

Publishers:genengnews.com phys.org

Reality

Evidence55
Adoption
Not scored
Hype gap+20
Incentives
Not scored
Confidence60
scienceOne report1 publisher

Weill Cornell biophysicists locate where trace PIP2 holds rod-cell CNG channels closed

Weill Cornell biophysicists used cryo-EM to map the pocket where trace amounts of the lipid PIP2 dock onto rod-cell CNG channels and hold them shut. The site is a candidate drug target for inherited retinal degeneration, so far studied only in synthetic membranes.

Reality

Evidence55
Adoption
Not scored
Hype gap+35
Incentives35
Confidence50
scienceOne report1 publisher

Corramycin kills drug-resistant TB cultures by locking gyrase onto severed DNA

A team at HIPS, the Institut Pasteur and Universite Paris Cite reports that corramycin attacks the same enzyme as fluoroquinolones by a different route and stays active against isolates those drugs no longer touch. An earlier program dropped the compound over production cost.

Publishers:phys.org

Reality

Evidence58
Adoption
Not scored
Hype gap+22
Incentives66
Confidence62
scienceOne report1 publisher

Cryo-EM catches the trypanosomatid trans-spliceosome at the moment it joins two RNAs

Liege and Rockefeller researchers report near-atomic structures of the machine that adds the same short leader to nearly every trypanosomatid messenger RNA, including several proteins with no human counterpart.

Publishers:phys.org

Reality

Evidence62
Adoption12
Hype gap+18
Incentives62
Confidence57
scienceOne report1 publisher

Repair proteins bridged a broken DNA end with the nucleosome still in place

Two Johns Hopkins papers in Nature Communications examined double-strand breaks in DNA still wound on histones. The repair machinery joined the broken ends without stripping that packaging off first.

Publishers:phys.org

Reality

Evidence64
Adoption12
Hype gap+12
Incentives55
Confidence60
scienceOne report1 publisher

Scripps finds transthyretin can unfold by a second route that skips the dimer step

The four-unit protein can come apart directly when conditions turn acidic, and a screen of more than 100 variants suggests some brain-amyloidosis mutations reach that route at normal blood pH. Whether tafamidis blocks it was not tested.

Publishers:phys.org

Reality

Evidence62
Adoption
Not scored
Hype gap+12
Incentives58
Confidence55
scienceOne report1 publisher

Mycoplasma penetrans keeps a double-sized enzyme that appears to make its own methionine

The enzyme that loads methionine onto tRNA in this cell-invading bacterium is twice the size of the E. coli version. Rebecca Alexander's lab at Wake Forest reports that the extra half looks like a second enzyme.

Publishers:phys.org

Reality

Evidence55
Adoption
Not scored
Hype gap+25
Incentives60
Confidence55
scienceOne report1 publisher

Transcription caught mid-act in fly embryos, and it does not match the test tube

A Penn State team pulled native RNA polymerase II complexes out of fruit fly embryos and found some missing two of the canonical 12 subunits. The purified picture was tidier than the cell.

Publishers:phys.org

Reality

Evidence45
Adoption15
Hype gap+35
Incentives65
Confidence42